Vahan Simonyan: search on Z-Library

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1

Challenges, Solutions, and Quality Metrics of Personal Genome Assembly in Advancing Precision Medicine

Xiao, Wenming, Wu, Leihong, Yavas, Gokhan, Simonyan, Vahan, Ning, Baitang, Hong, Huixiao

Journal:

Year:

2016

Language:

english

File:

PDF, 920 KB

english, 2016

2

RNA polymerase beta subunit (rpoB) gene and the 16S–23S rRNA intergenic transcribed spacer region (ITS) as complementary molecular markers in addition to the 16S rRNA gene for phylogenetic analysis and identification of the species of the family Mycoplasmataceae

Dmitriy V. Volokhov, Vahan Simonyan, Maureen K. Davidson, Vladimir E. Chizhikov

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 1.04 MB

english, 2012

3

Molecular simulation of hydrogen adsorption in charged single-walled carbon nanotubes

Simonyan, Vahan V., Diep, Phong, Johnson, J. Karl

Journal:

The Journal of Chemical Physics

Year:

1999

Language:

english

File:

PDF, 385 KB

english, 1999

4

High-Performance Integrated Virtual Environment (HIVE) Tools and Applications for Big Data Analysis

Simonyan, Vahan, Mazumder, Raja

Journal:

Year:

2014

Language:

english

File:

PDF, 17.54 MB

english, 2014

5

Whole genome sequencing of live attenuated Leishmania donovani parasites reveals novel biomarkers of attenuation and enables product characterization

Gannavaram, Sreenivas, Torcivia, John, Gasparyan, Lusine, Kaul, Amit, Ismail, Nevien, Simonyan, Vahan, Nakhasi, Hira L.

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 1.77 MB

english, 2017

6

Separation and assembly of deep sequencing data into discrete sub-population genomes

Karagiannis, Konstantinos, Simonyan, Vahan, Chumakov, Konstantin, Mazumder, Raja

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 3.55 MB

english, 2017

7

Generation and propagation of recombinant mumps viruses exhibiting an additional U residue in the homopolymeric U tract of the F gene-end signal

Sauder, Christian J., Ngo, Laurie, Simonyan, Vahan, Cong, Yu, Zhang, Cheryl, Link, Malen, Malik, Tahir, Rubin, Steven A.

Journal:

Year:

2015

Language:

english

File:

PDF, 922 KB

english, 2015

8

HIVE-heptagon: A sensible variant-calling algorithm with post-alignment quality controls

Simonyan, Vahan, Chumakov, Konstantin, Donaldson, Eric, Karagiannis, Konstantinos, Lam, Phuc VinhNguyen, Dingerdissen, Hayley, Voskanian, Alin

Journal:

Year:

2017

Language:

english

File:

PDF, 865 KB

english, 2017

9

Single-Nucleotide Variations in Cardiac Arrhythmias: Prospects for Genomics and Proteomics Based Biomarker Discovery and Diagnostics

Abunimer, Ayman, Smith, Krista, Wu, Tsung-Jung, Lam, Phuc, Simonyan, Vahan, Mazumder, Raja

Journal:

Year:

2014

Language:

english

File:

PDF, 637 KB

english, 2014

10

SNVDis: A Proteome-wide Analysis Service for Evaluating nsSNVs in Protein Functional Sites and Pathways

Karagiannis, Konstantinos, Simonyan, Vahan, Mazumder, Raja

Journal:

Genomics, Proteomics & Bioinformatics

Year:

2013

Language:

english

File:

PDF, 617 KB

english, 2013

11

Whole genome single-nucleotide variation profile-based phylogenetic tree building methods for analysis of viral, bacterial and human genomes

Faison, William J., Rostovtsev, Alexandre, Castro-Nallar, Eduardo, Crandall, Keith A., Chumakov, Konstantin, Simonyan, Vahan, Mazumder, Raja

Journal:

Year:

2014

Language:

english

File:

PDF, 1011 KB

english, 2014

12

Streamlined Subpopulation, Subtype, and Recombination Analysis of HIV-1 Half-Genome Sequences Generated by High-Throughput Sequencing

Hora, Bhavna, Gulzar, Naila, Chen, Yue, Karagiannis, Konstantinos, Cai, Fangping, Su, Chang, Smith, Krista, Simonyan, Vahan, Shah, Sharaf Ali, Ahmed, Manzoor, Sanchez, Ana M., Stone, Mars, Cohen, Myro

Journal:

Year:

2020

File:

PDF, 4.48 MB

2020

13

A theoretical study of the mechanism of oxidative methane addition to the palladium ethylenediphosphine complex [H2P(CH2)2PH2]Pd with consideration for tunnelling

Viktor M. Mamaev, Igor P. Gloriozov, Vahan V. Simonyan, Yurii V. Babin, Dmitrii A. Lemenovskii

Journal:

Mendeleev Communications

Year:

2000

Language:

english

File:

PDF, 141 KB

english, 2000

14

PubChem3D: a new resource for scientists

Evan E Bolton, Jie Chen, Sunghwan Kim, Lianyi Han, Siqian He, Wenyao Shi, Vahan Simonyan, Yan Sun, Paul A Thiessen, Jiyao Wang, Bo Yu, Jian Zhang, Stephen H Bryant

Journal:

Journal of Cheminformatics

Year:

2011

Language:

english

File:

PDF, 938 KB

english, 2011

15

Deep sequencing approach for genetic stability evaluation of influenza A viruses

Bidzhieva, Bella, Zagorodnyaya, Tatiana, Karagiannis, Konstantinos, Simonyan, Vahan, Laassri, Majid, Chumakov, Konstantin

Journal:

Journal of Virological Methods

Year:

2014

Language:

english

File:

PDF, 1.18 MB

english, 2014

16

Quantum Chemical Analysis and Experimental Study of the Cycloaddition Reaction between Aminoacetylenes and 6-Nitroindolizines. NMR and ab Initio Evidence for the [4+2] Adduct Formation

Babaev, Eugene V., Simonyan, Vahan V., Pasichnichenko, Konstantin Yu., Nosova, Valentina M., Kisin, Alexander V., Jug, Karl

Journal:

Journal of Organic Chemistry

Year:

1999

Language:

english

File:

PDF, 132 KB

english, 1999

17

Theoretical study of oxidative methane addition to palladium clusters

Victor M. Mamaev, Igor P. Gloriozov, Vahan V. Simonyan, Andrew V. Prisyajnyuk, Yury A. Ustynyuk

Journal:

Mendeleev Communications

Year:

1996

Language:

english

File:

PDF, 115 KB

english, 1996

18

Tunneling in the Oxidative Addition Reaction of Methane to a Bare Palladium Atom

Victor M. Mamaev, Igor P. Gloriozov, Sergey Ya. Ishchenko, Vahan V. Simonyan, Eugene M. Myshakin, Andrew V. Prisyajnyuk, Yury A. Ustynyuk

Journal:

Mendeleev Communications

Year:

1995

Language:

english

File:

PDF, 205 KB

english, 1995

19

Codon and Codon-Pair Usage Tables (CoCoPUTs): Facilitating Genetic Variation Analyses and Recombinant Gene Design

Alexaki, Aikaterini, Kames, Jacob, Holcomb, David D., Athey, John, Santana-Quintero, Luis V., Lam, Phuc Vihn Nguyen, Hamasaki-Katagiri, Nobuko, Osipova, Ekaterina, Simonyan, Vahan, Bar, Haim, Komar, A

Journal:

Journal of Molecular Biology

Year:

2019

Language:

english

File:

PDF, 893 KB

english, 2019

20

HIVE-Hexagon: High-Performance, Parallelized Sequence Alignment for Next-Generation Sequencing Data Analysis

Santana-Quintero, Luis, Dingerdissen, Hayley, Thierry-Mieg, Jean, Mazumder, Raja, Simonyan, Vahan, Gilbert, Tom

Journal:

Year:

2014

Language:

english

File:

PDF, 788 KB

english, 2014

21

A new and updated resource for codon usage tables

Athey, John, Alexaki, Aikaterini, Osipova, Ekaterina, Rostovtsev, Alexandre, Santana-Quintero, Luis V., Katneni, Upendra, Simonyan, Vahan, Kimchi-Sarfaty, Chava

Journal:

BMC Bioinformatics

Year:

2017

Language:

english

File:

PDF, 1.74 MB

english, 2017

22

Mechanism of cycloaddition to indolizines

Vahan V. Simonyan, Alexander I. Zinin, Eugene V. Babaev, Karl Jug

Journal:

Journal of Physical Organic Chemistry

Year:

1998

Language:

english

File:

PDF, 174 KB

english, 1998

23

Hydrogen storage in carbon nanotubes and graphitic nanofibers

Vahan V Simonyan, J.Karl Johnson

Journal:

Journal of Alloys and Compounds

Year:

2002

Language:

english

File:

PDF, 220 KB

english, 2002

24

Tunnelling effects in the oxidative addition of a dihydrogen molecule to the palladium ethylenediphosphine complexes [H2P(CH2)2PH2]Pd and [H2P(CH2)2PH2]Pd2

Viktor M. Mamaev, Igor P. Gloriozov, Vahan V. Simonyan, Elena V. Zernova, Eugene M. Myshakin, Yuri V. Babin

Journal:

Mendeleev Communications

Year:

2000

Language:

english

File:

PDF, 137 KB

english, 2000

25

Non-synonymous variations in cancer and their effects on the human proteome: workflow for NGS data biocuration and proteome-wide analysis of TCGA data

Cole, Charles, Krampis, Konstantinos, Karagiannis, Konstantinos, Almeida, Jonas S, Faison, William J, Motwani, Mona, Wan, Quan, Golikov, Anton, Pan, Yang, Simonyan, Vahan, Mazumder, Raja

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 1.02 MB

english, 2014

26

A framework for application of metabolic modeling in yeast to predict the effects of nsSNV in human orthologs

Dingerdissen, Hayley, Weaver, Daniel S, Karp, Peter D, Pan, Yang, Simonyan, Vahan, Mazumder, Raja

Journal:

Year:

2014

Language:

english

File:

PDF, 956 KB

english, 2014

27

Molecular simulation of xenon adsorption on single-walled carbon nanotubes

Simonyan, Vahan V., Johnson, J. Karl, Kuznetsova, Anya, Yates, John T.

Journal:

The Journal of Chemical Physics

Year:

2001

Language:

english

File:

PDF, 554 KB

english, 2001

28

A theoretical study of the mechanism of oxidative dihydrogen addition to palladium clusters

Victor M. Mamaev, Igor P. Gloriozov, Vahan V. Simonyan, Elena V. Zernova, Andrew V. Prisyajnyuk, Yurii A. Ustynyuk

Journal:

Mendeleev Communications

Year:

1997

Language:

english

File:

PDF, 159 KB

english, 1997

29

Proteome-wide analysis of nonsynonymous single-nucleotide variations in active sites of human proteins

Dingerdissen, Hayley, Motwani, Mona, Karagiannis, Konstantinos, Simonyan, Vahan, Mazumder, Raja

Journal:

Year:

2013

Language:

english

File:

PDF, 626 KB

english, 2013

30

Evidence that a polyhexameric genome length is preferred, but not strictly required, for efficient mumps virus replication

Sauder, Christian J., Simonyan, Vahan, Ngo, Laurie, Karagiannis, Konstantinos, Cong, Yu, Zhang, Cheryl, Wang, Rong, Wu, Wells W., Malik, Tahir, Rubin, Steven A.

Journal:

Year:

2016

Language:

english

File:

PDF, 1.96 MB

english, 2016

31

Distinct Patterns of Expression of Transcription Factors in Response to Interferonβ and Interferonλ1

Novatt, Hilary, Theisen, Terence C., Massie, Tammy, Massie, Tristan, Simonyan, Vahan, Voskanian-Kordi, Alin, Renn, Lynnsey A., Rabin, Ronald L.

Journal:

Journal of Interferon & Cytokine Research

Year:

2016

Language:

english

File:

PDF, 460 KB

english, 2016

32

Development of an integrated platform using multidisciplinary real‐world data to facilitate biomarker discovery for medical products

Dabic, Stefan, Azarbaijani, Yasameen, Karapetyan, Tigran, Loyo‐Berrios, Nilsa, Simonyan, Vahan, Kitchner, Terrie, Brilliant, Murray, Torosyan, Yelizaveta

Journal:

Clinical and Translational Science

Year:

2019

Language:

english

File:

PDF, 1.01 MB

english, 2019

33

Structure-based Comparative Analysis and Prediction of N-linked Glycosylation Sites in Evolutionarily Distant Eukaryotes

Lam, Phuc Vinh Nguyen, Goldman, Radoslav, Karagiannis, Konstantinos, Narsule, Tejas, Simonyan, Vahan, Soika, Valerii, Mazumder, Raja

Journal:

Genomics, Proteomics & Bioinformatics

Year:

2013

Language:

english

File:

PDF, 612 KB

english, 2013

34

Census-based rapid and accurate metagenome taxonomic profiling

Shamsaddini, Amirhossein, Pan, Yang, Johnson, W, Krampis, Konstantinos, Shcheglovitova, Mariya, Simonyan, Vahan, Zanne, Amy, Mazumder, Raja

Journal:

Year:

2014

Language:

english

File:

PDF, 744 KB

english, 2014

35

Sequence comparison of Francisella tularensis LVS, LVS-G, and LVS-R

Kurtz, Sherry L, Voskanian-Kordi, Alin, Simonyan, Vahan, Elkins, Karen L

Journal:

Pathogens and Disease

Year:

2018

Language:

english

File:

PDF, 451 KB

english, 2018

36

A complete Leishmania donovani reference genome identifies novel genetic variations associated with virulence

Lypaczewski, Patrick, Hoshizaki, Johanna, Zhang, Wen-Wei, McCall, Laura-Isobel, Torcivia-Rodriguez, John, Simonyan, Vahan, Kaur, Amanpreet, Dewar, Ken, Matlashewski, Greg

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 2.75 MB

english, 2018

37

Tunnel effects in oxidative addition reaction of methane to bare Pd atom

Mamaev, Victor M., Gloriozov, Igor P., Ishchenko, Sergey Ya., Simonyan, Vahan V., Myshakin, Eugene M., Prisyajnyuk, Andrew V., Ustynyuk, Yury A.

Journal:

Journal of the Chemical Society Faraday Transactions

Year:

1995

Language:

english

File:

PDF, 429 KB

english, 1995

38

Evolution of echovirus 11 in a chronically infected immunodeficient patient

Laassri, Majid, Zagorodnyaya, Tatiana, Hassin-Baer, Sharon, Handsher, Rachel, Sofer, Danit, Weil, Merav, Karagiannis, Konstantinos, Simonyan, Vahan, Chumakov, Konstantin, Shulman, Lester, Minor, Phili

Journal:

Year:

2018

Language:

english

File:

PDF, 8.28 MB

english, 2018

39

Pubcast and Genecast: Browsing and explor-ing publications and associated curated con-tent in biology through mobile devices.

Goldweber, Scott, Theodore, Jamal, John Torcivia-Rodriguez, John, Simonyan, Vahan, Mazumder, Raja

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2016

Language:

english

File:

PDF, 935 KB

english, 2016

40

High-performance integrated virtual environment (HIVE): a robust infrastructure for next-generation sequence data analysis

Simonyan, Vahan, Chumakov, Konstantin, Dingerdissen, Hayley, Faison, William, Goldweber, Scott, Golikov, Anton, Gulzar, Naila, Karagiannis, Konstantinos, Vinh Nguyen Lam, Phuc, Maudru, Thomas, Muravit

Journal:

Year:

2016

Language:

english

File:

PDF, 1.85 MB

english, 2016

41

A second generation leishmanization vaccine with a markerless attenuated Leishmania major strain using CRISPR gene editing

Zhang, Wen-Wei, Karmakar, Subir, Gannavaram, Sreenivas, Dey, Ranadhir, Lypaczewski, Patrick, Ismail, Nevien, Siddiqui, Abid, Simonyan, Vahan, Oliveira, Fabiano, Coutinho-Abreu, Iliano V., DeSouza-Viei

Journal:

Nature Communications

Year:

2020

File:

PDF, 2.14 MB

2020

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